Very nice, thorough write up there. Nice collection of tips and techniques.
The Transgo 5EAT-HD2 kit I recently received did have a new supplementary orange spring for the TC regulator. It fits inside of the existing spring in that location. The TC spring is included with the RE5R05A-HD2 kit as well.
The restrictor orifice appears to install in the direct clutch path. I think it's there to increase the line pressure to the direct clutch, which would seem to add capacity to the gears 2,3,4. Does that sound right?
I was thinking the restrictor could be implemented as a stainless steel allen set screw with a specific hole size drilled through it. You could lightly tap corresponding vb hole/channel to fit the set screw/restrictor. Install with thread lock and stake lightly above the top thread to make sure it doesn't go anywhere. That way the mod stays with the VB, not the trans, and is easily removable and modified with a different orifice size if desired.
As far as the drilling, have you tried it with and without and decided against it? If so, why? It seems every VB kit out there for other platforms includes bits for drilling, so it would seem to be a good thing.