Hey thanks for all of the ideas. I have had several shops look it over, even a specialized tuner shop. The difficulty is that the problem is intermittent, (although it has gotten much worse in the last few months), and it doesn't throw any codes, even for a special scan tool. So, none of the shops could diagnose anything...
It does lose all power when it does it's thing, it looks like the dash is just wigging out but the engine actually cuts out. If you listen carefully you can hear the blowoff valve release boost when it clicks. The ABS light and traction control light come on when it does it, but then they go off after the engine shuts off and turns back on, but they don't always come on.
As far as temperature, I know that there is a connection to the operating temperature of the engine and the issue. It will never do it if the engine is cold, it only does it when warmed up. The first time it happened was sitting in a drive thru idling for about 10 mins. This is why I believe is has to do with a Sensor/Relay because it seems to reset after some time. I'll check the Crank position sensor.
I probably should have mentioned that my car is a 2007 SpecB with a Stage 2 Cobb Tune. Turbo back cat-less exhaust.
Any ideas as to any other Relays/Sensors that could cause this condition? Has anyone ever seen a computer act like this?